chr18_3

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.4

E-value:

0.0033

From sequence:

317690

To sequence:

317493

Alignments:

                      v       v          v     v v    v                      v v         v v v   v                NC
                 :::::{{{{{-{{{--{{{{--{{{{[[[[[[[[--[[[[[[[,,,,,,,,,,,,,,,,<<<<<<<___>>>>>>><<<<<---<<<-<<~~~~~~ CS
  RF01390      1 GUUUugcggCauccUCuGCcCuGGugGCcgcugCUCCgGCaGCAGuaCUGCUUUGCGCcgCCaGuGAUGCgCuGGuauCaGAUGCGGCGG*[12]* 102   
                 GUU U+     :C  CUGCC UGG :GCC:      C :C GCAG + U   U   GC : C  UGA GCG  G :  CA   G:G CGG      
    chr18 317690 GUUGUU----CCCCACUGCCUUGGUUGCCGAUAUCACGACGGCAGCUGU---UGCUGCAGGCCUUGACGCGGCGGCGUCAGCAGAGGCGG*[24]* 317584
                 ***995....59999*****************************97653...3334667777799**99998888877776655555554...7.. PP

                          v   v                                            v    v v                   v        v  NC
                 >>->>>--->>>>>((-(.(((((((-((~~~~~~))-))))))))-)),,,,]]]]]]]--]]]]]]]],,,,<<<__>>>,,}}}}}}}}--}} CS
  RF01390    103 CCUCCGAUGCuGauGaCg.aGGcGGCUgc*[73]*gcUGCCgCCucuuCcGAcGCuGCcGccGcagcgGCuGACgcaCCugcAucaCCgGCacugg 264   
                 CCU C:    UG  G:C  AGG GG UG:      :C  CC CCU  :C G +GC G: G+     :GGCUGA         AU: CCGGCA+  G
    chr18 317583 CCUUCUUCAGUGGAGGCUgAGGUGGUUGU*[ 0]*GCGGCCGCCUGCCCUGUUGCUGUGGAAGAGGUGGCUGA---------AUAUCCGGCAUCAG 317503
                 55544444445555554337777777775......5778888888889***********************98.........************99 PP

                       v         NC
                 }-}}}}}:::::::: CS
  RF01390    265 agGccgccUgugUUU 279   
                 :       U + U U
    chr18 317502 GU-----UUCCCUCU 317493
                 98.....899***** PP

>>

RNAfold
>chr18_3
ACCGAGCGCCCCACCAGCGCCUGCUGCUGCAAGAAGGCCGAGAGGGAAAC
CUGAUGCCGGAUAUUCAGCCACCUCUUCCACAGCAACAGGGCAGGCGGCC
GCACAACCACCUCAGCCUCCACUGAAGAAGGCGGCACGAACAGAGCCGUC
UAAACCCGCCUCUGCUGACGCCGCCGCGUCAAGGCCUGCAGCAACAGCUG
CCGUCGUGAUAUCGGCAACCAAGGCAGUGGGGAACAACAAGCACCGCGAU
CAUGGCACAACUUCCGAAGGUGGGCCCAA
........((((((...((((((((.(((......((..((((((.....((((..........))))...)))))))).......)))))))))))(((((.........((((......)))).....))))).....(((((.((........)).))))).((((((....))))))..(((((((((....))))).((((......)))).....)))).))))))........((.((((..((..((........))))..)))))).... (-93.80)

Length sequence

: 279

Length match:

196