chr18_6

cmsearch-Rfam

Family :

mir-328

Id:

RF00772

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00772

Description:

not description

Score:

38.6

E-value:

4e-05

From sequence:

408820

To sequence:

408968

Alignments:

                              v       v     v                   v    v       v                         NC
                 :<<<<<-<<<<<<<<<<<<<<<<-<<<<<-<---<_~~~~~~>-->>>>>>>>>>>>>>>>>>>>>>->>>>>:::::::::::: CS
  RF00772      1 UGGggcaGggGGGcaGgggGGGcUcAgGgAGAAAgu*[ 5]*cagCcCcUggCCCcccCugCCCccCCgccCCcugUuccaaaau 84    
                  GGG:: G:GGG  :GG:GGG : ::G GAGAA GU      C  CC C::: CCC:CC:  CCC:CC::CCC+ + UC++   +
    chr18 408820 CGGGGG-GGGGGGGGGGGGGGUGCGGGUGAGAACGU*[72]*CCUCCUCCCCCCCCUCCC-UCCCUCCCUCCCUCUCUCUUUCCC 408968
                 ****99.66666667777777788999999999876...*..777999999755555555.55555559**************** PP

>>

RNAfold
>chr18_6
GGGGGGGGGGGGGGGGGGGUGCGGGUGAGAACGUGGGAAGAGGCAUUCGU
GCUACUCCUGGAAAACCCGUCAGAAAAGUGCAGCCCAAGUGAGCAGCACU
CCUCGUCCUCCUCCCCCCCCUCCCUCCCUCCCUCCCUCUCUCUUUCCC
(((((((((((((((((((.(.(((.(((.....((((.((((.....(((((.(((((((.......................)).)).))).))))).)))).)))).))))))))))))))))))))))))))............ (-72.90)

Length sequence

: 148

Length match:

147