chr18_8

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.9

E-value:

0.0027

From sequence:

266704

To sequence:

266593

Alignments:

                                                                                                 NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<~~~~~~>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaG*[63]*CACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  A   G+GA  A A G:AGA :GGGA:GA:G  GAG      CAC  C:UC:UCCC:  CU:C+  C++ CC+CU+  +
    chr18 266704 CAGAAGAGAAUAUAAGAAGAGGGGGAGGAAGAGGAG*[40]*CACUUCUUCCUCCCUU-CUUCCCCCCUCCCCCUCAGC 266593
                 **********************************98...9..9**************6.******************** PP

>>

RNAfold
>chr18_8
GAGCCAAGUGAGCUGAGGGGGAGGGGGGAAGAAGGGAGGAAGAAGUGUUC
UUCUCACUUCUGCUCAUGGGAUCAUCAGAUUUACCCCCUCCUCUUCCUCC
CCCUCUUCUUAUAUUCUCUUCUGCUUCGAGAUGCG
((((.(((.(((..(((((((.((((((((((..(((((.(((((((.......)))))))......((((((....)))...))))))))))))))))))))))))).....))).)))..))))......... (-51.90)

Length sequence

: 135

Length match:

110