chr19_1

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

22.3

E-value:

0.0023

From sequence:

459097

To sequence:

459245

Alignments:

                                          v    v   v             v   v    v     v                               v NC
                 ((((--((--(((((((((.((,,<<<<<<<-<<<-----~~~~~~-->>>->>>>>>>,,,,<<________________________...__>> CS
  RF02400    208 GGGCUCgGUGuGGaGaagG.aGguGcCaaGuAGCCCCGUU*[50]*CCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCUCCc...Ccgu 343   
                 G:G:  GG G:GG:GA:GG AGG G :::G     C GUU      C      C::: C CU  C+A CC C  C CU  C  UCUC      CG 
    chr19 459097 GAGU--GGAGGGGGGAGGGgAGGGGAGGGGAGGGACUGUU*[28]*CUCUUUCCCUCCCUCUUUCAAGCCUCCUCUCUCUCUCUCUCUGggcUCGU 459212
                 6665..9999999999875155444444444444444444...6..22222233333344444444444443333333333333333333334477 PP

                                                    NC
                 ,,,,,,,,,,,,)))))))))-))--))--)))) CS
  RF02400    344 acccccCuCUCUCuCuuuCuCGCaucCuCUGCCC 377   
                    C CC+  CUCUCU:UC:CGC:UCCUC :C:C
    chr19 459213 CAACGCCCUCCUCUCUCUCCCGCCUCCUC-ACUC 459245
                 777777777789999*************9.5666 PP

>>

RNAfold
>chr19_1
UUUUGGCUACGCACGCUCCAUCCCACCCCCCCCCCCCCCCCCCUCCUCCU
CCUAAGCUGCUCUUCUUAGCGGCUUGUUUGGUUGGUCGUGCCGCUGUGAA
UACGCGUGUGUGUGUGUGUGUGUGGCGCUUUGCUACAUUUGCUGCACAAA
AGACUUGACUGAGUGGAGGGGGGAGGGGAGGGGAGGGGAGGGACUGUUCG
UUUAACAGAGCCCCUCCCCUACCUCCCUCUUUCCCUCCCUCUUUCAAGCC
UCCUCUCUCUCUCUCUCUGGGCUCGUCAACGCCCUCCUCUCUCUCCCGCC
UCCUCACUCUCCACUCUACCCAACAGGCCUCUACACAGGAUAGGCAUUGG
GUACUCAUCUCGCAGCACCACACAUCGGCAUGUACACAUCCGGUCUCCAC
CGUCGCUCUCUCUCUGGCUCACUCACCUGUUCUUUUGGUUGUUAGCGGCC
CUGAUGUCUGGAACGAAGGU
....(((.......)))...........................(((((...(((((((((......)))))))))...)).((..(((((((.((((.((((((......))))))..(((((((.....))))))).((((((.....((.(((((..(((.(((((((((.(((((((..(((((((((.(((((.....)))))...))))))))).))))))).))))))))))))..))))).)).................((((........))))................................(((((((...((((((.....)))..))).)))))))........))))))...)))).)))))))..))..(((((.(..((..((((((..(..((......((......))......))..)..))))))..))..).)))))....))). (-157.70)

Length sequence

: 470

Length match:

147