chr19_13

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

29.2

E-value:

0.00026

From sequence:

288646

To sequence:

288828

Alignments:

                                     v    v                                                   v    v              NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<___~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>>::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCU*[38]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuc 128   
                 +A    +G+ GAGA   :GA :GGG :G:GG AGAG  :G+GA GG: C       :C+ UCCC:  C CU CC:C: CCC:  C: CUUU++C +
    chr19 288646 GACGACAGUGGAGAA-GGGACGGGGAGGGGGGAGAGGGGGGGAAGGCACC*[86]*GCUUUCCCCUCCCCUCCCCCCCCCCCCCCCUCUUUUACCU 288820
                 *************99.******************************9876...9..9*************************999999******** PP

                          NC
                 :::::::: CS
  RF00690    129 cucuuUuu 136   
                 +UC +U U
    chr19 288821 UUCACUCU 288828
                 ******** PP

>>

RNAfold
>chr19_13
ACGACAGUGGAGAAGGGACGGGGAGGGGGGAGAGGGGGGGAAGGCACCCC
UCUCCGCCCUCGUUGUGUUCUGUCCCUUUUCCUUUCUUUGUGUGUAUGUG
UAGAGGUGACCCACCGUCCCGUCCGUUCACUUCUGCUUUCCCCUCCCCUC
CCCCCCCCCCCCCCUCUUUUACCUUUCACUCU
......((((((.((((..((((.((((((((.((((((((((((..........))).........................................(((((((((((..((......))..).)))))))))).))))))))).))))))))))))..)))).)))))).......... (-71.20)

Length sequence

: 182

Length match:

181