chr19_14

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

24.9

E-value:

0.0055

From sequence:

564146

To sequence:

564270

Alignments:

                                     v                     v  vv                          vv  v              v    NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<.......-<<<<<-<---<<______~~~~~~>>---->>>>>>->>>>>>->>>>>>>->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG.......aGCAuGaGAUGGaGCUauc*[35]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCU 118   
                  +UUG   A G GA+GG:GA :GGG :G:GG :G             +GA GGAG U         UCCC CCC   C C: CC: : CCC:  C:
    chr19 564146 CGUUGU--ACGGGAGGGGGA-GGGGGGGGGGAGGugcaaga------GGAGGGAGUUGGA*[29]*UCCCCCCCC--CUCCUCCCUCUCCCUC-CC 564252
                 ***995..566677777776.44444555556664444443......3444444443332...4..776666665..4566666667788876.88 PP

                                    NC
                 >::::::::::::::::: CS
  RF00690    119 CCuuucuCuccucuuUuu 136   
                 CC+UUCUCUCCUCU+U  
    chr19 564253 CCCUUCUCUCCUCUCUGG 564270
                 88999************* PP

>>

RNAfold
>chr19_14
UUUACCGUUGUACGGGAGGGGGAGGGGGGGGGGAGGUGCAAGAGGAGGGA
GUUGGACGCGCCUUUGGGAUGGGAAGUGAGGGUGUUCCCCCCCCCUCCUC
CCUCUCCCUCCCCCCUUCUCUCCUCUCUGGGGUCUC
...(((.(.....((((((((.((((((((((((((.(...((((((((.(..(((.(((((((((..........))))))))))))..).)))))))).)))))))))))))))))))))))....).)))... (-74.10)

Length sequence

: 136

Length match:

123