chr19_15

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

28.4

E-value:

0.0025

From sequence:

645845

To sequence:

645751

Alignments:

                                    v             v        v              v        v             v                NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<------<<<<<________>>>>>------>>-->>>>>>>>>>>>->>>>>>>>:::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGcaucCauGuaAaGuaaCauGgcuGugUACaugCGUGCUcuCUcUCGuuGUCAuucaau 96    
                  ++A+U    :G  A::GA :GAGAG A :: U    G A+: ::G  A G  AC:: :+ G++  C+U:: U CUCUC: UC::U  C:+U   U
    chr19 645845 GUCAGUCCAGCGUGAGGGAAGGAGAGGAGAGGU----GAAGAGAGGACACGG-ACCCGUUAGCA--CCUCUCUCCUCUCCCUCCCUCACGAUACGU 645757
                 *****************************9855....445566677777777.66676666665..58899************************* PP

                        NC
                 :::::: CS
  RF00714     97 uuuaua 102   
                  UU +A
    chr19 645756 GUUUCA 645751
                 ****** PP

>>

RNAfold
>chr19_15
AAAUGAAACACGUAUCGUGAGGGAGGGAGAGGAGAGAGGUGCUAACGGGU
CCGUGUCCUCUCUUCACCUCUCCUCUCCUUCCCUCACGCUGGACUGACUC
GC
...(((..((.((..((((((((((((((((((((..((((.....(((.......))).....))))))))))))))))))))))))....))))..))). (-49.10)

Length sequence

: 102

Length match:

93