chr19_16

cmsearch-Rfam

Family :

mir-940

Id:

RF01023

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01023

Description:

not description

Score:

39.9

E-value:

0.0012

From sequence:

564160

To sequence:

564252

Alignments:

                                        v  v   v v   v                          v  v  v   v  v                  NC
                 <<<<<<<-<<<<<<<<<-----<<<<<<<<<<<<--<<--<<<<_________>>-->>--->>->>>->>>>>>>>>>>>>>>>>>>>>>>>> CS
  RF01023      1 guGgGGugcggGcccGgccccAGGagcGGGGCCcGGGCAgCCCcgUGUGUUGAgGAAGGAAGGCAgGGcCCCCgcuCCcCgggCccgaCCcCac 94    
                 G:G:GG:G G G:::GG  C A  :G GGG   :GG C   CC: UG G UG :GAAG  AGG  :  C CCC C:  CC:::C C :CC:C:C
    chr19 564160 GGGAGGGGGGGGGGAGGUGCAAGAGGAGGGAGUUGGACGCGCCUUUGGGAUG-GGAAGUGAGGGUGUUCCCCCCCCCUCCUCCCUCUCCCUCCC 564252
                 *****************998877777777778889************99998.9**************************************** PP

RNAfold
>chr19_16
GGGAGGGGGGGGGGAGGUGCAAGAGGAGGGAGUUGGACGCGCCUUUGGGA
UGGGAAGUGAGGGUGUUCCCCCCCCCUCCUCCCUCUCCCUCCCC
....(((((((((((((.....((((((((.(..(((.(((((((((..........))))))))))))..).))))))))))))))))))))) (-55.40)

Length sequence

: 94

Length match:

91