chr19_17

cmsearch-Rfam

Family :

snoTBR7

Id:

RF00295

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF00295

Description:

TBR7 is a member of the C/D class of snoRNA which contain the C (UGAUGA) and
D (CUGA) box motifs. Most of the members of the box C/D family function in
directing site-specific 2'-O-methylation of substrate RNAs [1,2].

Score:

81.6

E-value:

2.2e-15

From sequence:

731492

To sequence:

731564

Alignments:

                                                                                              NC
                 ::::::::::::::::::::::::::::::::::<<<____>>>:::::::::::::::::::::::::::::::: CS
  RF00295      1 uAuAUGAUGAUUGACuguAACAUCACAGACUUUGacgAaCCcguGAGaaAGaAACaaUGUcGCcCCAGUCUGAcuu 76    
                 +A AUGAUGAUUGACUGUAACAUCACAGACUUUG:::   C:::++GA AG A C AUGUCGC CCAGUCUGAC+U
    chr19 731492 CAGAUGAUGAUUGACUGUAACAUCACAGACUUUGAGU---CGCGAUGAGAGCAGCCAUGUCGCUCCAGUCUGACGU 731564
                 *************************************...9*********************************** PP

RNAfold
>chr19_17
CCAGAUGAUGAUUGACUGUAACAUCACAGACUUUGAGUCGCGAUGAGAGC
AGCCAUGUCGCUCCAGUCUGACGUGU
.(((((((((((((.((((..((((.(.((((...))))).))))...)))).)).)))).))..)))))...... (-18.10)

Length sequence

: 76

Length match:

71