chr19_2

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

32.5

E-value:

0.0032

From sequence:

515334

To sequence:

515260

Alignments:

                                                                                                         NC
                 :<<<<<<--.--<<<<<<<<<<<<-----------<<<<_______________>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCU.cGGGaGGuGGaGGGUgGcgucgccAGggCcaGgGcgcuGUCUcAGccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                  UGAGG     GGG :::GG:GG: GGCGU +   GGG:  G   GCUG  UC :CCC      :CC:CC::: CCUCU  CCUCAG
    chr19 515334 AUGAGGGGGaGGGGGAAAGGGGGGGGGCGUGA---GGGGAUG---GCUGCUUCCCCCC------UCCUCCUUUUCCUCUUUCCUCAG 515260
                 *****996515677788888888888888776...8888777...4555555555555......8999999999************* PP

>>

RNAfold
>chr19_2
AAGUGCUGAGGAAAGAGGAAAAGGAGGAGGGGGGAAGCAGCCAUCCCCUC
ACGCCCCCCCCCUUUCCCCCUCCCCCUCAUUUACAA
..(((.(((((...((((....((.(((((((((..((..............))..))))))))).))))))..)))))..))).. (-31.50)

Length sequence

: 86

Length match:

73