chr19_3

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

35.3

E-value:

0.0006

From sequence:

564154

To sequence:

564269

Alignments:

                                                                                                  NC
                 :<<<<<<----<<<<<<<<<<<<-----------<<<<___~~~~~~>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggCcaG*[12]*GccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G GAG :   GG  GG:GG::GGU   G+ +   G:G: AG      :C:C CU   CC::CC:CC  CUCUC: CUC G
    chr19 564154 GGGAGGGGGAGGGGGGGGGGAGGU---GCAAGAGGAGGGAG*[45]*CCUCCCUCUCCCUCCCCCCUUCUCUCCUCUCUG 564269
                 *******55555555555555554...44444444444333...9..67774666668889999999************* PP

>>

RNAfold
>chr19_3
GGAGGGGGAGGGGGGGGGGAGGUGCAAGAGGAGGGAGUUGGACGCGCCUU
UGGGAUGGGAAGUGAGGGUGUUCCCCCCCCCUCCUCCCUCUCCCUCCCCC
CUUCUCUCCUCUCUG
((((((((((((((((((((((.(...((((((((.(..(((.(((((((((..........))))))))))))..).)))))))).))))))).))))))))).)))))))... (-70.10)

Length sequence

: 115

Length match:

114