chr19_4

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

28.7

E-value:

0.0025

From sequence:

459086

To sequence:

459191

Alignments:

                                     v                         v                v                     v           NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<..-<<-<<<<---<<<<<________>>>>>>>>>->>-.>>>>>>>>>>>->>-->>->>>: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGG..AGaUGGGCCAaGuuCCCUCUGgCUGGaaCGCCCUuCC.CCCCCucCucCACCUgGCGaaCU 93    
                    A  U A UG::+G A G  ::G::GG AGG  AG: G:G: A  : :C U U  C G: : :C:C :C  CC CC::C::  CC   C ::CU
    chr19 459086 AAGACUUGACUGAGUGGAGG-GGGGAGGGGAGGggAGGGGAGGGACUGUUCGUUUAACAGAGCCCCUCCCCUaCCUCCCUCUUUCCC--UCCCUCU 459178
                 *****************955.555555555555469********************************9999677777777777666..4448888 PP

                               NC
                 ::::::::::::: CS
  RF01918     94 CCUACUCGUCCUU 106   
                    A  C UCCU 
    chr19 459179 UUCAAGCCUCCUC 459191
                 8889999****** PP

>>

RNAfold
>chr19_4
AGACUUGACUGAGUGGAGGGGGGAGGGGAGGGGAGGGGAGGGACUGUUCG
UUUAACAGAGCCCCUCCCCUACCUCCCUCUUUCCCUCCCUCUUUCAAGCC
UCCUC
((.(((((..(((.(((((((((.(((((((..(((((((((.(((((.....)))))...))))))))).))))))).))))))))))))..))))).)).... (-64.10)

Length sequence

: 105

Length match:

104