chr19_5

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

27.9

E-value:

0.0042

From sequence:

564143

To sequence:

564266

Alignments:

                                                                                                          NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<-<<~~~~~~>>->>->>>>>>>>>>>->.>-->>->>>:::::::::::::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGaUGG*[25]*CCUuCCCCCCCucCucCAC.CUgGCGaaCUCCUACUCGUCCUU 106   
                   C G U    G:: G:  GGG::G::GGG GGAG:U :      : U:CCCCCCC::C::C C CU :C ::C CCU CUC  C  U
    chr19 564143 UACCGUUGUACGGGAGG--GGGAGGGGGGGGGGAGGUGC*[44]*GUUCCCCCCCCCUCCUCCCuCUCCCUCCCCCCUUCUCUCCUCU 564266
                 ****************9..99999999999999999976...9..67899999999999998652566899***************** PP

>>

RNAfold
>chr19_5
ACCGUUGUACGGGAGGGGGAGGGGGGGGGGAGGUGCAAGAGGAGGGAGUU
GGACGCGCCUUUGGGAUGGGAAGUGAGGGUGUUCCCCCCCCCUCCUCCCU
CUCCCUCCCCCCUUCUCUCCUCU
.((((...))))(((((((((((((((((((((.(...((((((((.(..(((.(((((((((..........))))))))))))..).)))))))).))))))).))))))))).)))))). (-72.90)

Length sequence

: 123

Length match:

122