chr19_8

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

29.9

E-value:

0.0087

From sequence:

459185

To sequence:

459093

Alignments:

                                      v          v                                  v          v                  NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<<<<-<<<<<<<<<<<~~~~~~>>>>>>>>>>>->>>>>>>>>>-->>>->>>->>>>>:::::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGAgcggUaGGaAUGGGa*[77]*uCCCAUuCCuAucguUCucaggugCUCCuuCCucuuCCUUuua 167   
                 G U G AAGA:G:AG::A+AG GG        +:G  :GG:A GG :      : CC U:CC:  C:          C CC::CC:C:UCC  U A
    chr19 459185 GCUUGAAAGAGGGAGGGAAAGAGGG-------AGGUAGGGGAGGGGC*[15]*GUCCCUCCCCUCCC--------CUCCCCUCCCCCCUCCACUCA 459096
                 *****************99998765.......234455555555544...9..34455555554443........5567788899999999999** PP

                     NC
                 ::: CS
  RF01911    168 guU 170   
                 GU 
    chr19 459095 GUC 459093
                 *** PP

>>

RNAfold
>chr19_8
UGUGUGGCGCUUUGCUACAUUUGCUGCACAAAAGACUUGACUGAGUGGAG
GGGGGAGGGGAGGGGAGGGGAGGGACUGUUCGUUUAACAGAGCCCCUCCC
CUACCUCCCUCUUUCCCUCCCUCUUUCAAGCCUCCUCUCUCUCUCUCUCU
GGGCUCGUCAACGCCCUCCU
(((((((((............)))))))))..((.(((((..(((.(((((((((.(((((((..(((((((((.(((((.....)))))...))))))))).))))))).))))))))))))..))))).)).................((((........)))).... (-80.40)

Length sequence

: 170

Length match:

91