chr1_12

cmsearch-Rfam

Family :

MIR815

Id:

RF00884

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00884

Description:

not description

Score:

32.2

E-value:

0.0022

From sequence:

44898

To sequence:

44808

Alignments:

                                                                                         NC
                <<<<<<<<<<<<.<<-<<--<<<<<<<<-<<<~~~~~~>>>-->>>>>>>>-->>->>-.>>>>>>>>>>>> CS
  RF00884     1 cUucccAauCUc.UcaAUUUCcUUcUCuAagA*[17]*UuuGAgGAgAAgGGGAUUgAG.gAGauUgggaAg 81   
                ::U:C::::CU: :C A:  CC:UC:C:A:::      :::G :G:GA:GGGG:U G:  :AG::::G:A::
     chr1 44898 UCUUCUUCCCUUaCCCACCCCCCUCCCCAUCU*[26]*AGAG-GGGGAGGGGGGUGGGUaGAGGGAGGGAGA 44808
                ************88899999999999999555...8..4444.88999999999987756************ PP

>>

RNAfold
>chr1_12
CUCCCUCCCUCUACCCACCCCCCUCCCCCUCUCUUGCGGCGCUGGCGGAG
AUCGAUGGAGAUGGGGAGGGGGGUGGGUAAGGGAAGAAGA
((.(.(((((.(((((((((((((((((.(((((..((((.((...)).).)))..))))).)))))))))))))))))))))).).)). (-60.90)

Length sequence

: 90

Length match:

89