chr1_2

cmsearch-Rfam

Family :

mir-1224

Id:

RF00942

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00942

Description:

not description

Score:

31.4

E-value:

0.0061

From sequence:

217129

To sequence:

217239

Alignments:

                  v                                                                                v  NC
                 :<<<<<<----<<<<<<<<<<<<-----------<<<<_______~~~~~~>>>>------>>>>>>>>>>>>---->>>>>>: CS
  RF00942      1 GuGaGGaCUcGGGaGGuGGaGGGUgGcgucgccAGggCcaGgGcg*[ 8]*GccCGcuUCuCCCcCCaCCuCCUCUCuCCuCaG 86    
                 G  :GGA   GG:A G:GGAGGGU GC+  GCC GGG:  G G G      :CCC C  C CCCCCC:C U:CUCUCUCC:   
     chr1 217129 GUGGGGA--GGGAAGGGGGAGGGUUGCAGGGCCGGGGUGCGUGAG*[36]*ACCCAC-CCACCCCCCCCUUUCUCUCUCCCUCU 217239
                 *******..79**************************98876655...9..9***55.699*********************** PP

>>

RNAfold
>chr1_2
UGGGGAGGGAAGGGGGAGGGUUGCAGGGCCGGGGUGCGUGAGCGCCACGC
GCAUGGACCCAUCCGCCCCUGCCCCGCUACCCACCCACCCCCCCCUUUCU
CUCUCCCUCU
.(((((((((((((((.((((.((((((.((((((.((((.(((...))).)))).)))...))).))))))..............)))).))))))))))))))).... (-62.30)

Length sequence

: 110

Length match:

109