chr1_3

cmsearch-Rfam

Family :

mir-1249

Id:

RF01918

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01918

Description:

not description

Score:

27.6

E-value:

0.0053

From sequence:

136656

To sequence:

136756

Alignments:

                                 v  v                    v           v                  v  v                    NC
                 :::::::::::<<<-<<--<<<<<<<<<<<-<<-<<..-<<<<-~~~~~~>>>>->>->>>>>>>>>>>->>-->>->>>:::::::::::::: CS
  RF01918      1 CUCAGAUUaUUGuugGCAUGGGgaGgaGGGAGGAGa..UGGGCC*[20]*GCCCUuCCCCCCCucCucCACCUgGCGaaCUCCUACUCGUCCUU 106   
                 CU A AU + UGU:+G  U GGG:GG: :GAGG G:  U  GCC      GC  U:CCCCC: :CC:CC C    CG:AC C   C C  CC  
     chr1 136656 CUUACAUGCGUGUGUGUGUAGGGGGGGGAGAGGGGGaaUGAGCC*[13]*GCCUUCCCCCCUUCCCCCCCCCCCCCGCACACACGCCCCCCCCG 136756
                 ****************9999999999999999988844444555...6..566778888888888888888899999999999999******** PP

RNAfold
>chr1_3
GGCUUACAUGCGUGUGUGUGUAGGGGGGGGAGAGGGGGAAUGAGCCAUUU
UCGUCGUCAGCCUUCCCCCCUUCCCCCCCCCCCCCGCACACACGCCCCCC
CCGUCG
(((......(((((((((((..((((((((((.(((((((.(.((..............)))))))))).))))))))))....))))))))))).......))). (-58.00)

Length sequence

: 106

Length match:

99