chr1_4

cmsearch-Rfam

Family :

mir-197

Id:

RF00707

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00707

Description:

not description

Score:

37.4

E-value:

0.00073

From sequence:

136746

To sequence:

136667

Alignments:

                        v                                                v        NC
                 <<<<<<<<<<<<<<<<<<<<<--<<<<--~~~~~~-->>>>-->>>>>>>>>>>>>>>>>>>>> CS
  RF00707      1 gGccguGccGGGuaGaGagGGCAGuGgGA*[17]*cUuCaCCACCcuCuCuaCCCggCacggCc 75    
                 G ::GUG  GGG::G:G G G AG::GG       C U::CC C C C:C::CCC  CAC:: C
     chr1 136746 GUGUGUGCGGGGGGGGGGGGGAAGGGGGG*[22]*CAUUCCCCCUCUCCCCCCCCUACACACAC 136667
                 **********************8777753...8..56888888999999999************ PP

>>

RNAfold
>chr1_4
UGUGUGUAGGGGGGGGAGAGGGGGAAUGAGCCAUUUUCGUCGUCAGCCUU
CCCCCCUUCCCCCCCCCCCCCGCACACAC
(((((((.((((((((((.(((((((.(.((..............)))))))))).)))))))))).....))))))). (-44.40)

Length sequence

: 79

Length match:

78