chr1_8

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

27.4

E-value:

0.0051

From sequence:

202018

To sequence:

202106

Alignments:

                                            v                         v                              NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<-----~~~~~~>>-->>>>>>>>>>>>->>>>>>>>:::::::::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGca*[25]*ACaugCGUGCUcuCUcUCGuuGUCAuucaauuuuaua 102   
                 + U +      GA A::G GAGA::GC CG:  GU A  A      AC U:CG GC::UCUC C::U UC        +U+U 
     chr1 202018 UGUGGGCACGAGAAAGUGCGAGACGGCACGUACGUGAAGA*[12]*ACGUACGCGCCGUCUCGCACUUUCUCGUCGCCAUCUG 202106
                 *******************************999987655...6..9999********************************* PP

RNAfold
>chr1_8
AUGAGGUGUGGGCACGAGAAAGUGCGAGACGGCACGUACGUGAAGAGCUA
CACGGGUGACGUACGCGCCGUCUCGCACUUUCUCGUCGCCAUCUGUCGUG
GU
((((.(.((((..((((((((((((((((((((.(((((((.(...(.....)...).))))))).))))))))))))))))))))..)))).).))))... (-62.60)

Length sequence

: 102

Length match:

87