chr1_9

cmsearch-Rfam

Family :

MIR535

Id:

RF00714

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00714

Description:

not description

Score:

28.7

E-value:

0.0021

From sequence:

202104

To sequence:

202016

Alignments:

                                                                                                        NC
                 ::::::::::<<<<<<<<-<<<<<<<<<<<<--<<------~~~~~~-->>-->>>>>>>>>>>>->>>>>>>>:::::::::::: CS
  RF00714      1 cauaaUUgguUGACaaCGAgAGagAGCACGcUuGUuaGcau*[22]*gUACaugCGUGCUcuCUcUCGuuGUCAuucaauuuuaua 102   
                  AU +      GA A::G GAGA::GC CG:  GU A C++        AC U:CG GC::UCUC C::U UC        ++A++
     chr1 202104 GAUGGCGACGAGAAAGUGCGAGACGGCGCGUACGUCACCCG*[ 9]*UCACGUACGUGCCGUCUCGCACUUUCUCGUGCCCACACC 202016
                 ***********************************987776...7..56************************************* PP

>>

RNAfold
>chr1_9
GCAUGAGGUGUGGGCACGAGAAAGUGCGAGACGGCACGUACGUGAAGAGC
UACACGGGUGACGUACGCGCCGUCUCGCACUUUCUCGUCGCCAUCUGUCG
UG
.(((((.(.((((..((((((((((((((((((((.(((((((.(...(.....)...).))))))).))))))))))))))))))))..)))).).))))) (-64.40)

Length sequence

: 102

Length match:

87