chr21_10

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.7

E-value:

0.0031

From sequence:

448025

To sequence:

448140

Alignments:

                                         vvv                                                                      NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_________________________________________>>---->> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUgUuGCuCcCuCCC 96    
                 AAUU  + A +A A++GAGA AG    GAG  AG     G :A  G:    UCAA+     G GA  + A G UGGA   GU GU+ C:C  +C:C
    chr21 448025 AAUUCCACACAAUAGAGAGAGAGG---GAGGGAG-----G-AAG-GGAGAGUCAAU-----GCGAUCGUACGCUGGAGAGGUGGUGACUCGUACUC 448105
                 *********************997...8998887.....3.454.44456677777.....788***************************99985 PP

                             vvv                          NC
                 >>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     97 aUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                      CU  CUC+++ CU  CUC UUU+U+U++U+UUUUU
    chr21 448106 -----CUCUCUCAAAUCUCUCUCUUUUUUUUUUUUUUUUU 448140
                 .....8888999999************************* PP

>>

RNAfold
>chr21_10
GAGCUCUGAAAUUCCACACAAUAGAGAGAGAGGGAGGGAGGAAGGGAGAG
UCAAUGCGAUCGUACGCUGGAGAGGUGGUGACUCGUACUCCUCUCUCAAA
UCUCUCUCUUUUUUUUUUUUUUUUUUCCUGCAGCU
.(((((.((((...........((((((((((((((((((((.(...((((((.(((..((........))...))).))))))...))))))))))...)))))))))))............))))..).)))) (-45.60)

Length sequence

: 135

Length match:

114