chr21_11

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.4

E-value:

0.0038

From sequence:

462212

To sequence:

462114

Alignments:

                                                                                                     NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<~~~~~~>>->>>>>>-..>>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGC*[61]*GCACUGCcUC..uUCCCuGGCUCCuuucuCuccucuuUuu 136   
                  +  G  GA GAGA++GAGA AGGGA:G::G :G GC      GC C: C::   :UCCCU  CUC +UU+++ CCUCUU  +
    chr21 462212 UGGGGAGGAAGAGAGAGAGAGAGGGAGGGAGGGGGGC*[22]*GCGCCUCUCUguCUCCCUCUCUCUCUUUAUCCCUCUUCGC 462114
                 ***************************9888888777...9..555555555334**************************** PP

>>

RNAfold
>chr21_11
CUUAGAUUGCACUGAAGAGCGAAGAGGGAUAAAGAGAGAGAGGGAGACAG
AGAGGCGCUGAUACUUUGUUCCCGGCGUGUGCCCCCCUCCCUCCCUCUCU
CUCUCUCUUCCUCCCCACGGUGCGCAUGGCAGAAAG
.......(((((((..(((.(((((((((...((((((.(((((((...(..(.((((((............)))))).)..)...))))))).)))))).))))))))))))....)))))))............ (-57.10)

Length sequence

: 136

Length match:

97