chr21_14

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

70.0

E-value:

1.9e-14

From sequence:

159532

To sequence:

159452

Alignments:

                                                                                                    NC
                 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,..........,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaag..........gcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G:A:A::U+GC::AGUGGU A::GCG:C:G:CU+ +AA:C:G:+           GCG::GGUUCGAA CC::C::U:U:C+
    chr21 159532 GCAAACGUGGCCGAGUGGUuAAGGCGCCUGCCUGCUAAGCAGGU-gugaucucacGCGAAGGUUCGAACCCUUCCGUUUGCG 159452
                 ****************9999************************.8********95************************** PP

>>

RNAfold
>chr21_14
GCAAACGGAAGGGUUCGAACCUUCGCGUGAGAUCACACCUGCUUAGCAGG
CAGGCGCCUUAACCACUCGGCCACGUUUGC
((((((((((((.......)))))..(((....))).(((((((...))))))).(((..........)))..))))))) (-27.90)

Length sequence

: 80

Length match:

79