chr21_3

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

23.2

E-value:

0.0013

From sequence:

256405

To sequence:

256258

Alignments:

                             v               v     v                               v                              NC
                 [[,,,,,,(((((--((--(((((((((((,,<<<<<<<-<<<-----~~~~~~---->>>->>>>>>>,,,,<<_____________________ CS
  RF02400    199 CGAAuCuCaGGGCUCgGUGuGGaGaagGaGguGcCaaGuAGCCCCGUU*[48]*CCCCGGCCaCuuGgCACUCacuaCCCCCUCCCCUUCCCUUCU 336   
                 :GAA    AGG:   GGUG:GGA: A:G GG G: ::::A:: C G        CC C ::C:::: :CA        CCCCUCCCCU  C  UCU
    chr21 256405 AGAAGGGAAGGUAAUGGUGGGGAA-AGGCGGAGUCGGAGAAGGCGG--*[13]*CCUCUCUCCUCCUCCA-------UCCCCUCCCCUCUCUCUCU 256313
                 ******************999775.566777788777777776554.....7..4444566666666665.......5789999999999999999 PP

                                     v                v                                NC
                 _____>>,,,,,,,,,,,,)))))))))-))--))--))))),,,,<<<<-<<_______>>->>>>]] CS
  RF02400    337 CCcCcguacccccCuCUCUCuCuuuCuCGCaucCuCUGCCCuCuCACCGgCGCGccGGGCGCAcCGGCG 405   
                 C  CC   CC+CC + UCUC C:U :UC C: +CU U :CCU  CAC:G:            A:C:GC:
    chr21 256312 CUUCC--UCCUCCUCGUCUCUCCU-UUCUCCCUCUUUCACCUUCCACGGAG-----------AUCCGCU 256258
                 99999..88888888888888765.57789999****************95...........49***** PP

>>

RNAfold
>chr21_3
UGGUGCCUCUUUAAGCGUUCAUUAACUACAUAUCUAUCGAGCAGUCAGUA
UGCCUGUGCGGCUUGGGUGUACCUCUCUCACCCCUUCACACACACACACA
CAUUCUCUCUCUGGGUUUCCCCUUUUCUAUGGUGAUGUGAGUGAGUGGCU
UGUAGGCUAUAGCGGAUCUCCGUGGAAGGUGAAAGAGGGAGAAAGGAGAG
ACGAGGAGGAGGAAGAGAGAGAGAGGGGAGGGGAUGGAGGAGGAGAGAGG
GUGUGCAUUCUCGCCGCCUUCUCCGACUCCGCCUUUCCCCACCAUUACCU
UCCCUUCUUUUAAUUCGCGUUUCUCUUAUGCUCCAAGACGACAAGGCAAC
CGCGGCAAGUAUAGCGCGCAAGGUGCCACAUGGGGAAGGCAGUCCGCUGG
UAUUCUCACGCGCGCGUACACAGGAGCAAGGCUAGUGUGGGUGAGGGGGU
GGAGCGGCAGGCACACUCU
..((((((..................(((((.....((((((.(((((.....))).)).)))))))))))((.(((.(((((((((((.(((((.......((((((((((....(((.(((..(((((((.(((.((.....((((((....))))))..)).))).)))))))))).)))))))))))))((((((((((((((((.(((((..((.(.(.(((((((((.(((((..(((((..(((((.((......))))))))))))..)))))))))))))).)).))..)))))))))))........)))))))))).((((((...........((....)).....((((.((((((.((((((((...(.(((......))).)))))).)))...))))))))))...))))))......))))).)))))))))))))).)).))))))..... (-193.30)

Length sequence

: 469

Length match:

146