chr21_4

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.1

E-value:

0.0041

From sequence:

263058

To sequence:

262754

Alignments:

                              v                   v  v                               v v   v v    v               NC
                 :::::{{{{{-{{{--{{{{..--{{{{[.[[[[[[[--[[[[[[[,,,,,,,,,,,,,,,,..<<<<<<<___>>>>>>><<<<<---<<<-<<< CS
  RF01390      1 GUUUugcggCauccUCuGCc..CuGGugG.CcgcugCUCCgGCaGCAGuaCUGCUUUGCGCc..gCCaGuGAUGCgCuGGuauCaGAUGCGGCGGC 91    
                 G U  GC GC  C  CUG      GGUGG :::  :   C:GC GC     U  UU   GCC   ::: : AUG : :::  : AGAUGC :CGGC
    chr21 263058 GAUCCGCUGCUGCCACUGUGcgGCGGUGGcGGCAUUCCGCCGCGGCCACCAUCAUUGUAGCCggUGUGAUGAUGAAACACGUGUAGAUGCGACGGC 262963
                 **************9888776578999996778888899*******99888877776666651155666778888889999************988 PP

                                     v     v  v                                         v        v                NC
                 ~~~~~~>>>->>>--->>>>>((-((((((((-((((((-((((-(((((,<<____>>,,,,<<----<<<<~~~~~~>>>>---->>,)))))- CS
  RF01390     92 *[10]*GCCUCCGAUGCuGauGaCgaGGcGGCUgccGCgccggcuGCcGcugcAcuugcuGaCGcugcugcgu*[ 9]*acgcUUUUgCugCgGCu 194   
                       GCC : G UGCU : G: :: GC GCU:C: C  C  CUG  :CUG:    :C    GCUGCUGC :      : GCU UUGCUG:  CU
    chr21 262962 *[23]*GCC-UUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGUGGCUGUGGAAGCGCUUGCUGCUGCUG*[18]*CUGCUGUUGCUGUUGCU 262839
                 ...9..566.467777777777777777777777777777777777777777755544433333333333322...5..78999999********* PP

                               v  v                  v  v        vvv  vvv                v                 NC
                 ))))-))))))-))))))))-)),,,,]]]]]]]--]]]]]]]],,,,<<<__>>>,,}}}}....}}}}--}}}-}}}}}:::::::: CS
  RF01390    195 gccgacGCggcUGCCgCCucuuCcGAcGCuGCcGccGcagcgGCuGACgcaCCugcAucaCC....gGCacuggagGccgccUgugUUU 279   
                 G  G  G :G: GC GC ::U:C G +GC GC:G+  :  :::CUG C    C+ CA CACC      CA+  G GGC GC U + U  
    chr21 262838 GUGGUGGUGGUGGCUGCUGUUGCUGUUGCUGCGGAGCAGGGCCCUGGC----CACCACCACCgcgaUGCAUGCGUGGCGGCAUACCUAG 262754
                 **********************************99888888888765....4444889998999999********************* PP

>>

RNAfold
>chr21_4
UAGGUAUGCCGCCACGCAUGCAUCGCGGUGGUGGUGGCCAGGGCCCUGCU
CCGCAGCAACAGCAACAGCAGCCACCACCACCACAGCAACAGCAACAGCA
GUCACCAACACAGCCACCGCAGCAGCAGCAAGCGCUUCCACAGCCACAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGCUACGGCAAUGGCACA
GGUGGGCCGCCGUCGCAUCUACACGUGUUUCAUCAUCACACCGGCUACAA
UGAUGGUGGCCGCGGCGGAAUGCCGCCACCGCCGCACAGUGGCAGCAGCG
GAUC
...((.(((.(((((...(((...(.((((((((((((....((..((((....))))...)).......)))))))))))).).)))((.((....)).))((((......(((((((.(((.((.....))))).....((((...((.((.((.((.((....)).)).)).)).))..)))).)))...))))...))))(((((((((((.........((((.........)))).........)))))))))))(((((((..........)))))))...))))).)))))..... (-112.10)

Length sequence

: 304

Length match:

303