chr21_5

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

29.9

E-value:

0.009

From sequence:

379932

To sequence:

379859

Alignments:

                          v v  v                                     v  v v           NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<~~~~~~~>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaG*[109]*CucaggugCUCCuuCCucuuCCUUuuaguU 170   
                 G  AG  +G : AA :: GAGAGG :::G:G       C:C:::U CUCC:: CU : CCUUUU +UU
    chr21 379932 GGCAGUUGGAGAAAAGGGGAGAGGAGGGGGG*[ 13]*CCCCCCUUCUCCUCCCUCCACCUUUUCUUU 379859
                 *************************999998....9..999999************************ PP

>>

RNAfold
>chr21_5
UCUCUCUCUCGCGCGUGUGUGUGUGUGUGUGUGUACUGAUGAAGAGGAAA
GAAAAGGUGGAGGGAGGAGAAGGGGGGGGGGUGAAAGCUUCCCCCCUCCU
CUCCCCUUUUCUCCAACUGCCUCAGACACUCACACGUCUCUUGCCCUCGC
GCGCGCGCGCUCUCUCUCU
..........(((((((((((((((((((.((((.((((.(.((.(((..(((((((.((((((.(.....(((((((((((....))))))))))))))))))))))))))))..)).).)))))))).))))))...........)))))))))))))......... (-80.50)

Length sequence

: 169

Length match:

72