chr21_6

cmsearch-Rfam

Family :

MIR2118

Id:

RF01911

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF01911

Description:

not description

Score:

30.5

E-value:

0.0064

From sequence:

462210

To sequence:

462120

Alignments:

                                                                                        NC
                 ::::::::<<<<<-<<<---<<<--<<<<<<<~~~~~~~>>>>>>>-->>>->>>->>>>>::::::::: CS
  RF01911      1 guuaGgaAGaagaAGaaaGAGAGguccugaGA*[107]*UCucaggugCUCCuuCCucuuCCUUuuaguU 170   
                 G  AGGAAGA:::AGA:AGAG G+  ::G G:       :C C::   C CC:UC :::UC UU+U  +U
    chr21 462210 GGGAGGAAGAGAGAGAGAGAGGGAGGGAGGGG*[ 28]*CCUCUCUGUCUCCCUCUCUCUCUUUAUCCCU 462120
                 *****************988888777777776....9..788888899********************** PP

>>

RNAfold
>chr21_6
UGCGCGCACUUGAGGCUUAGAUUGCACUGAAGAGCGAAGAGGGAUAAAGA
GAGAGAGGGAGACAGAGAGGCGCUGAUACUUUGUUCCCGGCGUGUGCCCC
CCUCCCUCCCUCUCUCUCUCUCUUCCUCCCCACGGUGCGCAUGGCAGAAA
GAUGUGCCAUUCACAACCCA
...(((((((((.((.((((......)))).(((.(((((((((...((((((.(((((((...(..(.((((((............)))))).)..)...))))))).)))))).)))))))))))))))).)))))))((((((........)))))).......... (-70.10)

Length sequence

: 170

Length match:

89