chr22_1

cmsearch-Rfam

Family :

BjrC80

Id:

RF02354

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

43.1

E-value:

1.1e-05

From sequence:

211900

To sequence:

212025

Alignments:

                                                                              v     v                             NC
                 ::::::::<<<<<<<-<<<<______________>>>>->>>>>>>,,,,,<<<<<<<<<-<<___>>>>>>>>>>><<~~~~~~>><<<<<<<<< CS
  RF02354      1 aaaugGaaggcgccgccggcaauuGUcGCCCCCagccgacggcgccuUCCgGGGGgcGgguccaAaggccCgcCCCCgc*[45]*gcGGGcGguGg 135   
                 AAAU+   :::::::+::::AA++  C CCCCC ::::A:::::::    GGGGGG:GGG        CCC:CCCCCG:      :CGGG:GG:GG
    chr22 211900 AAAUUUUUUUUUUUUUUAAAAAAAAACCCCCCCCUUUAAAAAAAAAAA-GGGGGGGGGGG-------CCCCCCCCCCGG*[ 2]*CCGGGGGGGGG 211983
                 **************************************9999999998.33333333333.......266666666665...7..56666666666 PP

                                              NC
                 <<<_~~~~~~>>>>>>>>>>>>:::::: CS
  RF02354    136 gguc*[ 5]*gcccCacCgCCCgcuuUu 162   
                 GG         CCCC:CC:CCCGC+ U+
    chr22 211984 GGGG*[20]*UCCCCCCCCCCCGCCCUC 212025
                 6643...9..799*************** PP

>>

RNAfold
>chr22_1
AGGCCCCCCCCCCGGGAAAAUUUUUUUUUUUUUUAAAAAAAAACCCCCCC
CUUUAAAAAAAAAAAGGGGGGGGGGGCCCCCCCCCCGGCCCCGGGGGGGG
GGGGGCCGAAAAAAAAAAAACUUUCUCCCCCCCCCCCGCCCUCUUUCCGG
AAUGGGGGGGG
...(((((((((((((((..(((((((((.....)))))))))(((((((((((........)))))))))))(((((........)))))((((((((((((((...................)))))))))))))).....)))))))...)))))))) (-97.90)

Length sequence

: 161

Length match:

124