chr22_14

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

27.5

E-value:

0.00089

From sequence:

103544

To sequence:

103892

Alignments:

                                        v                                                                         NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<.............................................................. CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG.............................................................. 34    
                 AAUU  U + +AG  GGAGA AG  : GAG  :G                                                              
    chr22 103544 AAUUCAUAUGAAGGAGGAGAGAGGGGGGAGGGGGgggggucguggcagucgaagagugagcggacgugccccgcucgugugaagcgacaacggaaa 103639

                                                                                                                  NC
                 ................................................................................................ CS
  RF00690     35 ................................................................................................ 34    
                                                                                                                 
    chr22 103640 ggucacggcagcgucauacgucguucuucgcgucaacgugcgcgugugugcgcgcuuccguggaguguuccuccuuuccucgucagagcaaagcga 103735

                                                                                                         v        NC
                 .........-<<<<<-<---<<_____________________________________~~~~~~>>---->>>>>>->>>>>>->>>>>>>->>> CS
  RF00690     35 .........aGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaagaUGgaauUGUUg*[ 4]*uCcCuCCCaUGCACUGCcUCuUCCCuGGCUC 119   
                          AG A:G GAUGGAGCU   A  A A++G GA A + +     ++ UGUUG      UCC  CCC:U C C:  CUC :  CU  CUC
    chr22 103736 agagagaggAGGAAGUGAUGGAGCUGAAAGGAGAGGGAGAUACGCGCCGCUUUGUGUUG*[50]*UCCUCCCCUUCCCCCCUCUCUCUACUCCCUC 103875

                                   NC
                 ::::::::::::::::: CS
  RF00690    120 CuuucuCuccucuuUuu 136   
                 C+U C+CUCC+CU+U U
    chr22 103876 CCUCCCCUCCCCUCUCU 103892

>>

RNAfold
>chr22_14
AUUCAUAUGAAGGAGGAGAGAGGGGGGAGGGGGGGGGGUCGUGGCAGUCG
AAGAGUGAGCGGACGUGCCCCGCUCGUGUGAAGCGACAACGGAAAGGUCA
CGGCAGCGUCAUACGUCGUUCUUCGCGUCAACGUGCGCGUGUGUGCGCGC
UUCCGUGGAGUGUUCCUCCUUUCCUCGUCAGAGCAAAGCGAAGAGAGAGG
AGGAAGUGAUGGAGCUGAAAGGAGAGGGAGAUACGCGCCGCUUUGUGUUG
CACAAAACAUGAGUUACGCCAAAGCGACACGGGGACCAGUAAACACGGCG
UCCUCCCCUUCCCCCCUCUCUCUACUCCCUCCCUCCCCUCCCCUCUCU
........((.((((((((((((((((((((((((((((((((.(((((............))).))((((((((((((...(.(.(((((.((((....((((.((((.((.(.((.((((((...(((.(((((((....))))))).((((((......((((((((((((((((.........))).)).)))))))))))...)))))).)))..)))))).))))))))))))))))).)))))).)...)))))))...(((....)))...))))).........)))))).))))))))))))))))))))))..)))).))................. (-152.00)

Length sequence

: 348

Length match:

347