chr22_15

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

26.7

E-value:

0.0016

From sequence:

210977

To sequence:

211129

Alignments:

                                     vv  v   vvvv                                                                 NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<<<<<-<---<<_____________...............__________~~~~~~>>--- CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaGCAuGaGAUGGaGCUaucAAcaAau...............ugUGAgAaaa*[18]*uCcCu 93    
                 A  UGGUGA    AU+GAGA  GG A:     :GAG A:GAGA GG: C    AA +A                          A      :CCC 
    chr22 210977 ACCUGGUGAGUGCAUAGAGACUGGAAGC----GGAGGAGGAGAGGGGACAGGAAAAGAUCaaucauuuugacaga---------A*[33]*CCCCC 211086
                 ***********************96654....6667777777777887777777776655555555455544444.........1...6..88889 PP

                           vvvv   v  vv                      NC
                 ->>>>>>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     94 CCCaUGCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 CCC:U C C:+CCUC:U CC   CUCC U +UCUC+  U U U
    chr22 211087 CCCCUCCUCCUCCUCCUCCCCAACUCCAUCUUCUCUGAUGUGU 211129
                 999999999999999999************************* PP

>>

RNAfold
>chr22_15
CCUGGUGAGUGCAUAGAGACUGGAAGCGGAGGAGGAGAGGGGACAGGAAA
AGAUCAAUCAUUUUGACAGAAGCACCACGGAGCUCUCUGCGGCCGCGUAC
UCCCCCCCCCCCCUCCUCCUCCUCCUCCCCAACUCCAUCUUCUCUGAUGU
GU
..........(((((((((.((((.(.((((((((((.(((((..((......((((.....))))(((((((........))).))))((....))............))..))))))))))))))).)...))))...))))).)))).. (-50.40)

Length sequence

: 152

Length match:

151