chr22_16

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

25.6

E-value:

0.0034

From sequence:

212919

To sequence:

213055

Alignments:

                                                 v            v   v                                          v  v NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<........-<<<<<-<---<<_________________________~~~~~~>>---->>>> CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAG........aGCAuGaGAUGGaGCUaucAAcaAauugUGAgAaaaag*[16]*uCcCuCCCaU 98    
                 A++ G  G UGAG  GG:G  :GGG: G ::C G         GC UG+ AUGGA   A   A  AA   UGA+A A+A+      UC C+C CA 
    chr22 212919 AGAAGCGGGUGAG--GGGGGGGGGGGGGGAACAGagcaacuaCGCAUGGCAUGGAAGGAAGGAA-AAACAUGAAAUAUAA*[12]*UCACACACAC 213017
                 ***9999888755..5666688888888999***********8999999999988877777776.444455566555544...6..********** PP

                     v                                  NC
                 >>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690     99 GCACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 GCAC G:: C :CCC:  C:CC+UUC+C  C + +U +
    chr22 213018 GCACCGUUUCUCCCCCCCCCCCCUUCCCCGCGUGCUCC 213055
                 *****************99999**************** PP

>>

RNAfold
>chr22_16
GAAGCGGGUGAGGGGGGGGGGGGGGGAACAGAGCAACUACGCAUGGCAUG
GAAGGAAGGAAAAACAUGAAAUAUAACAUCUAGCGUCAUCACACACACGC
ACCGUUUCUCCCCCCCCCCCCUUCCCCGCGUGCUCC
...(((((.((((((((((((((((((((.(.((........(((((.((((.(......................).))))..))))).........)).).)))))))))))))))))))).)))))....... (-64.10)

Length sequence

: 136

Length match:

135