chr22_17

cmsearch-Rfam

Family :

MIR408

Id:

RF00690

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00690

Description:

not description

Score:

28.1

E-value:

0.00057

From sequence:

277412

To sequence:

277332

Alignments:

                                                                                                 NC
                 ::::::::::::::::<<<-<<<<<<<-<<<<<<-<~~~~~~>->>>>>>->>>>>>>->>>::::::::::::::::: CS
  RF00690      1 aauUGGugAugAgAugGAGACaGGGAagAgGCAGaG*[63]*CACUGCcUCuUCCCuGGCUCCuuucuCuccucuuUuu 136   
                 +A+  G+ A +AGAUGGAG  AGGGA G G   G G      CAC   C   UCCCU GCUC + U++C+C++C U ++
    chr22 277412 GAACAGAAAAAAGAUGGAGGGAGGGAGGGGGAGGGG*[ 8]*CACUUUCUUUUCCCUUGCUCGCCUUACACUCCAUGAC 277332
                 ****************************99999988...9..99*********************************** PP

>>

RNAfold
>chr22_17
ACGCACGUCUUGCUCUCUGUGUCCCCUGUCAUGGAGUGUAAGGCGAGCAA
GGGAAAAGAAAGUGAAGAGGCACCCCUCCCCCUCCCUCCCUCCAUCUUUU
UUCUGUUCAUCUCAGGGCACCACAACACCUCAUGAA
..((.((((((((.(((((((........))))))).)))))))).)).((((((((((.((.((.((((..........))))..)).))...)))))))))).(((((...(((...........))).))))) (-38.60)

Length sequence

: 136

Length match:

79