chr22_18

cmsearch-Rfam

Family :

MIR529

Id:

RF00908

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00908

Description:

not description

Score:

27.9

E-value:

0.0035

From sequence:

213053

To sequence:

212913

Alignments:

                                            v v     v                                                 v     v v   NC
                 ::::<<--<--<<-<<<<<<<<<<<<<<-<<<<<<<<<____...........________________________~~~~~~>>>>>>>>>->>> CS
  RF00908      1 acaUcaAGGCUaaAgGaaGaaGaGaGaGAGuaCaGCcuUaGu...........UcAGaUcacAuAUGacuAucuuUU*[25]*agGCuGuaCcCuC 104   
                 A   C: GG  ::A:G::G::G:G:G:   :AC G ::  GU            +AGAU ++AUAU  C  ++UUUU      :: C GU: C :C
    chr22 213053 AGCACGCGG--GGAAGGGGGGGGGGGGAGAAACGGUGCGUGUgugugaugacgCUAGAUGUUAUAUUUCAUGUUUUU*[25]*GCUCUGUUCCCCC 212941
                 **9999999..776666555554444444478999999888885554444444444444444444444333333333...6..9999999977777 PP

                                              NC
                 >>>>>>>>>>>-.>>-->---->>:::: CS
  RF00908    105 uCuCuuCuuCcC.uuAGCUUCUugauug 131   
                 :C:C::C::C:C :: GCUUCU:G+U+ 
    chr22 212940 CCCCCCCCCCUCaCCCGCUUCUUGUUGC 212913
                 77777777777667788*********** PP

>>

RNAfold
>chr22_18
CAACAAGAAGCGGGUGAGGGGGGGGGGGGGGGAACAGAGCAACUACGCAU
GGCAUGGAAGGAAGGAAAAACAUGAAAUAUAACAUCUAGCGUCAUCACAC
ACACGCACCGUUUCUCCCCCCCCCCCCUUCCCCGCGUGCU
.........(((((.((((((((((((((((((((.(.((........(((((.((((.(......................).))))..))))).........)).).)))))))))))))))))))).)))))..... (-64.10)

Length sequence

: 140

Length match:

139