chr22_2

cmsearch-Rfam

Family :

IRES_Bip

Id:

RF00223

Type:

Cis-reg; IRES;

Taxonomy:

Eukaryota;

Ontology:

GO:0043022 ribosome binding

Description:

This family represents the bip internal ribosome entry site (IRES). BiP protein expression has been found
to be significantly enhanced by the heat shock response due to IRES-dependent translation. It is
thought that this translational mechanism is essential for the survival of cells under stress [1].

Score:

20.1

E-value:

0.0069

From sequence:

216937

To sequence:

216875

Alignments:

                                                                                    NC
                 :::((((((,,,,,~~~~~~~,,,,,,,,,,,,,,,,,,,,,,,,,,,,))))))::::::::::: CS
  RF00223      1 cgCcgGCcaAGACa*[204]*cUgGCuGGCAAGAUGAAGCUCUCCcUGGugGCcgCGaUGCUGCUG 263   
                 C+ ::G C: G C+         G C G CAAGAUGA G+UC  C UG :G C::CG+U   G UG
    chr22 216937 CAAGUGUCGUGGCU*[  4]*UCGACAGACAAGAUGACGUUCAUCUUGCUGGCACCGGUAAAGGUG 216875
                 **************....7..56678899************************************* PP

>>

RNAfold
>chr22_2
GCGCACGAGCCGAGCACCGGUGCCGUCCGUCAUUUGCUGCUGCUCUUCUG
CAUCGUUGGAAAGACGGCGGCAGUCGGUGGCAAAGGCGUCAUCACGAUGC
ACCUUUACCGGUGCCAGCAAGAUGAACGUCAUCUUGUCUGUCGAUUGCAG
CCACGACACUUGGUUCUCCCGCUCCUCGUCGAAAGACAAAGGCUCGCUCU
CGGUGGCCGCGAGAAGCCCCGAGUCACACAUCCAUUCAUGGUACCGUGGC
ACAAAUGGCGCC
((((.((((((..((((((((((((.(((.(...((((((((.((((.(.((....)).)))))))))))))).))))))))...(((((.....))))).......)))))))(((((((((((...)))))))).))).((...(.(((((.......))))))...))......(((....)))...))))))...((((.(((........)))))))(((((....(((....)))....))))).......)))). (-99.70)

Length sequence

: 262

Length match:

61