chr22_22

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

26.6

E-value:

0.0025

From sequence:

46680

To sequence:

46526

Alignments:

                                                                                                                   NC
                <<<<------------------------------------.--------------------------------------------------------- CS
  RF01295     1 UGGAAAUGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUG.UaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUUUua 97   
                UG AAAU    AA  AG GA A      UG  GAA G UG  AUGA   GA AU   U AU U+U U UU AGU   UC U+UA  U    U   UUA
    chr22 46680 UGUAAAUA---AAUGAGGGACAC-----UGAAGAAGGGUGuAAUGAC--GACAUCGAUUAUUUUUUUUUUGAGUCUCUCAUCUACUUCCCCUCGCUUA 46593
                *****974...455566666654.....3556777777775567777..6777777777777777888888888888888888888888877777777 PP

                                                                              NC
                -------------.----....---------------------------~~~~~~~>>>>: CS
  RF01295    98 UaGauacuUaauA.GaGu....GUGUGUGUGugUGUGUGUGUgcuUgUG*[184]*UCCAA 330  
                U+GAU + U  U  G+GU    GUGUGUGUGUGUGUGUGUGUG  UGUG       U CAA
    chr22 46592 UUGAUUUCUCCUUgGUGUguauGUGUGUGUGUGUGUGUGUGUGAGUGUG*[ 13]*UGCAA 46526
                7777776666555333331122333333333333333444444444444....8..***** PP

>>

RNAfold
>chr22_22
AGGACCAUUCCAGCGAAACACUUAUGUGCCGACUGUCUCCUCUUAAUCUU
GUCAGAAGGCGUGAUGCGGGCAUCUUGCCUACAAUCGUUGCAGAGAGAGG
CACUCCACACUCACACACACACACACACACACAUACACACCAAGGAGAAA
UCAAUAAGCGAGGGGAAGUAGAUGAGAGACUCAAAAAAAAAAUAAUCGAU
GUCGUCAUUACACCCUUCUUCAGUGUCCCUCAUUUAUUUACAUUCCUACA
GAUGAUUCGGUACGGUUGCGCAUAACGCGUCGACGGCAACGGAGGAGGAG
CAAGAGUGGGUUCAGAAGACCAGCACUUGG
..........(((((...(((....))).)).))).((((((((....(((((.(..(((((((((((((((...))))..(((((((.((.(((((.((((((.....(((................................)))............((((((..((.(((((..(((((...............)).))).))))))).))))))...)))))).))).........((((......))))..)).))))))))))))))..))))))..))))))...))))))))((((.((.((((.....)))).)).)))). (-79.14)

Length sequence

: 330

Length match:

153