chr22_23

cmsearch-Rfam

Family :

SCARNA7

Id:

RF01295

Type:

Gene; snRNA; snoRNA; scaRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01295

Description:

not description

Score:

25.9

E-value:

0.0037

From sequence:

545367

To sequence:

545173

Alignments:

                                                                                                                  NC
                 <<<<--.----------------------------------------------------------------------------------------- CS
  RF01295      1 UGGAAA.UGAUGAAAUAGAGAUAAUUGGGUGUUGAAUGUUGUaUGAuUGGAAauUUUuAAUAugUAugUUAAgUAAUucuuauAAgUUuAaugUUU 95    
                  GGAA    AUGAAA    GAUA   GG        UG    +UGAUU G  AU  U A  A   AU   AAG  A  +  A+AA  U  A   U 
    chr22 545367 GGGAAGgAAAUGAAACGACGAUACAAGG--------UGACAGGUGAUUAGCGAUCAUCACCAGCAAUUGGAAGAUAGGAAAAAAAAGUCGAGUCUG 545280
                 ****962568999999999999998887........5667788999999*9***********9999998888887777666555555555555555 PP

                                                                                   NC
                 -----------------------------------------------------~~~~~~~>>>>: CS
  RF01295     96 uaUaGauacuUaauAGaGuGUGUGUGUGugUGUGUGUGUgcuUgUGgaGGCUA*[177]*UCCAA 330   
                 U U  +UA+ UA+  G+GUGUGUGUGUGUGUGUGUGUGUG+ UGU  A GCU        UCC  
    chr22 545279 UGUGUGUAUGUAUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUCUAUGCUU*[ 49]*UCCCU 545173
                 55566777888888888888888888888888888888888887777777765....9..***** PP

>>

RNAfold
>chr22_23
AGACUAGGGAAGGAGGAAGAAGGUGAGUGGAGCAAAAGAAAAAGUCAGAA
GAGAGGGAGGCGGAGAGAGGGAGCACGCGAGAUGUCUGACAGGCACAUAG
UGAUGUACUUCUCGUUAGCGCAAGCAUAGACACACACACACACACACACA
CACACACACACAUACAUACACACACAGACUCGACUUUUUUUUCCUAUCUU
CCAAUUGCUGGUGAUGAUCGCUAAUCACCUGUCACCUUGUAUCGUCGUUU
CAUUUCCUUCCCCUGAUUUUCUAUCAGAGUAGAGUUCACAGACGUGCGCA
CAGACAUACAUGUACGCACGCACACAUGCA
......((((((((((((((((((((.(((((...(((((((((((....(((...........((((((..((((((....(((((...)))))....))).))).))))))(((.((....))...)))...............................................))))))))))))))......)))))....(.((((((........)))))).)))))))).........))))..)))))))))(((...((((((....))))))....))).((((((.(((........))).)))))).......... (-77.70)

Length sequence

: 330

Length match:

193