chr22_4

cmsearch-Rfam

Family :

MIR1446

Id:

RF00954

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00954

Description:

not description

Score:

31.1

E-value:

0.0012

From sequence:

211739

To sequence:

211650

Alignments:

                     v     vvv                 v                         v                vvv     v     NC
                 <<<<<---<<<<<<<<.-<<<<<<<<<-<<<<<<<<------~~~~~~--->>>>>>>>->>>>->>>>>>>>>>>>>--->>>>> CS
  RF00954      1 CcagcuUuUuCuGaaC.UCuCucCCuCAaccGCugcUcuAGa*[26]*uuugcaGCggucGaGGUgaGaGGuuCaGaAAAUgcugG 105   
                 CC:: UUUUU   ::C  C:C:CCC:CA:C  C:::U+U         UUU:::G  G:+G:GG G:G:GG::   AAAA  ::GG
    chr22 211739 CCCGUUUUUUGCCCCCgGCCCCCCCCCACCCCCCAAUUUUUC*[12]*UUUUUGGGAGGGGGGGCGGGGGGGG--GAAAACUUGGG 211650
                 **********8888884599999*************988766...8..567*****************98555..4999******* PP

>>

RNAfold
>chr22_4
AUAAUUCCCCAAGUUUUCCCCCCCCCGCCCCCCCUCCCAAAAAGGGUUUU
UGGGGGAAAAAUUGGGGGGUGGGGGGGGGCCGGGGGCAAAAAACGGGGUG
UUUUA
..(((.((((..(((((((((((((((((((((((((((((((...)))))))))).......))))))))))))))))((...))...))))))))).)))... (-60.80)

Length sequence

: 105

Length match:

88