chr22_5

cmsearch-Rfam

Family :

MIR1446

Id:

RF00954

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00954

Description:

not description

Score:

33.2

E-value:

0.00031

From sequence:

211855

To sequence:

211749

Alignments:

                          v                   v                                               v                   NC
                 <<<<<---<<<<<<<<-<<<<<<<<<-<<<<<<<<------<<-<<-<<_____>>-..>>->>-------->>>>>>>>->>>>->>>>>>>>>> CS
  RF00954      1 CcagcuUuUuCuGaaCUCuCucCCuCAaccGCugcUcuAGaucuugucgAucuUcgu..caagaaUuucuuugcaGCggucGaGGUgaGaGGuuCa 94    
                 :::::UUU: C: ::C C:C:CCC:: :: G :G: ++A +   :G :: U+UU::U  C:   + UU U  :C: C ::+::GG G:G:GG:: :
    chr22 211855 UUUUUUUUCCCCCCCCCCCCCCCCUUUUUUGGGGGCUAAUUUUCGGGGUUUUUUACUccCCGGGGGUUUUCCCCCCCCGAGAGGGGGGGGGGGGGG 211760
                 ***********************************999999888887887777777622456777788888899999999999999********** PP

                  v          NC
                 >>>--->>>>> CS
  RF00954     95 GaAAAUgcugG 105   
                 G :   :::::
    chr22 211759 GUGCCCAAAAA 211749
                 *********** PP

>>

RNAfold
>chr22_5
UUUUGGGCACCCCCCCCCCCCCCCUCUCGGGGGGGGAAAACCCCCGGGGA
GUAAAAAACCCCGAAAAUUAGCCCCCAAAAAAGGGGGGGGGGGGGGGGAA
AAAAAA
((((...(.((((((((((((((((...((((((((.....)))(((((.........)))))........))))).....)))))))))))))))))...)))). (-65.70)

Length sequence

: 106

Length match:

105