chr22_6

cmsearch-Rfam

Family :

MIR1446

Id:

RF00954

Type:

Gene; miRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0035068 micro-ribonucleoprotein complexRF00954

Description:

not description

Score:

30.0

E-value:

0.0025

From sequence:

438028

To sequence:

438137

Alignments:

                              v                  v                                          v                  v  NC
                 <<<<<---<<<<<<<<-<<<<<<<<<-<<<<<<<<------.<<-<<-<<_~~~~~~>>->>->>-------->>>>>>>>->>>>->>>>>>>>> CS
  RF00954      1 CcagcuUuUuCuGaaCUCuCucCCuCAaccGCugcUcuAGa.ucuugucgA*[ 4]*cgucaagaaUuucuuugcaGCggucGaGGUgaGaGGuuC 93    
                 CCA     ::C:   CUC:C:CCC:  :CCGCU CUC+ +A :CU::U::       :: ::+G:+U U U+UG  GCGG:+ :GG G:G:GG   
    chr22 438028 CCA-----CCCCCAUCUCUCCCCCCUCCCCGCUGCUCACAAaGCUCUUGCU*[16]*GCCAGUGUGUGUGUGUGU-GCGGGGGGGGGGGGGGGGGG 438127
                 **9.....***************************99977769**999985...9..899999999999999997.99999999998888887777 PP

                              NC
                 >>>>--->>>>> CS
  RF00954     94 aGaAAAUgcugG 105   
                 :G:: A   UGG
    chr22 438128 GGGGGAA--UGG 438137
                 7777766..9** PP

RNAfold
>chr22_6
CACCCCCAUCUCUCCCCCCUCCCCGCUGCUCACAAAGCUCUUGCUUUUCU
GAUCUCCCUUUGCCAGUGUGUGUGUGUGUGCGGGGGGGGGGGGGGGGGGG
GGGGAAUGG
..(((((.(((((((((((((((((((((.((((..((.((.((.................)).)).)).)))).))).)))))))))))))))))).)))))...... (-64.20)

Length sequence

: 109

Length match:

108