chr23_11

cmsearch-Rfam

Family :

TB6Cs1H1

Id:

RF01546

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01546

Description:

not description

Score:

81.6

E-value:

1.7e-18

From sequence:

759448

To sequence:

759380

Alignments:

                                                                                       NC
                 :<<-<<<<<------<<<<<<<--<<...___________>>-->>>>>>>------>>>>>->>:::: CS
  RF01546      1 aGGuCAGCGAAAACACAGgCGcuguG...uuUacauCgaUCacUgCGcCUGCACCUGUGCUGuCCgAGA 66    
                 AGGUCAGCGAAAACACAG:CG:+GUG   UUUAC +C AUCA+U:CG:CUGCACCUGUGCUGUCCGAGA
    chr23 759448 AGGUCAGCGAAAACACAGUCGAAGUGccaUUUACCCCCAUCAUUUCGCCUGCACCUGUGCUGUCCGAGA 759380
                 **************************9655666699********************************* PP

>>

RNAfold
>chr23_11
CUCGGACAGCACAGGUGCAGGCGAAAUGAUGGGGGUAAAUGGCACUUCGA
CUGUGUUUUCGCUGACCU
..((((.(((((((..(.((((...................)).)).)..)))))))))))....... (-14.60)

Length sequence

: 68

Length match:

67