chr23_3

cmsearch-Rfam

Family :

Hsp83_3_UTR

Id:

RF02400

Type:

Cis-reg;

Taxonomy:

Eukaryota;

Ontology:

GO:0006417 regulation of translation

Description:

not description

Score:

20.7

E-value:

0.0076

From sequence:

290197

To sequence:

290026

Alignments:

                           v      v v      v                vv               v v                v        v v      NC
                 ((--(((((((((((,,<<<<<<<-<<<-----<<<--<<<-<<<<<<---~~~~~~>>>>->>->>>->>>------>>>->>>..>>>>,,,,< CS
  RF02400    214 gGUGuGGaGaagGaGguGcCaaGuAGCCCCGUUGCGGAGaGugugugaCCC*[13]*ucacugcCCuCCCGCuUCCCCGGCCaCu..uGgCACUCa 314   
                 G: G:GGAG: GGAGGU : ::GU G+:  G UG GG  :G G  UGACC       UCA + CCC: CC C+UC CC: C AC:  :+: A U :
    chr23 290197 GAGGAGGAGGAGGAGGUGG-UGGUGGUGGUGGUGGGGGGGGGGGCUGACCU*[27]*UCACAGCCCCUCCUCCUCUCCC-CGACCggAUCGAGUUG 290083
                 ****************864.5667788888888888888888888998765...9..6666666666666665555554.5555521233477778 PP

                                                              v              NC
                 <__________________________>>,,,,,,,,,,,,)))))))))-))--))-- CS
  RF02400    315 cuaCCCCCUCCCCUUCCCUUCUCCcCcguacccccCuCUCUCuCuuuCuCGCaucCuCU 373   
                  U C C  U   C   CC  C C     :ACCCC+CUCUCUCUCU :CUC C:U+:UCU
    chr23 290082 UUUCACGAUUUUCACACCCGCAC--AUGCACCCCUCUCUCUCUCUCUCUCUCUUUUUCU 290026
                 87777777666655555544444..4477778889999999999999************ PP

>>

RNAfold
>chr23_3
GGGUGGAAAUGAAAGUGAGGGGGUGCGAUCAUCAUCAUCAUCAUCAUCGC
CUUCGUUUUUUUCUUUUACAGUCACAUCAACAGAGGUAGAGGAAGCACAA
CGUAGCAAAACGAAGUGUGUCGAACAACAAGAAACGCAGCCGCCGCAAAG
AAAAAGAGAGAGAGAGAGAGAGAGGGGUGCAUGUGCGGGUGUGAAAAUCG
UGAAACAACUCGAUCCGGUCGGGGAGAGGAGGAGGGGCUGUGAAGCAAUG
AGGGUUUGACUCCUGCAAUAAGGUCAGCCCCCCCCCCCACCACCACCACC
ACCACCUCCUCCUCCUCCUCCUGCCGCCCUCCCCACGGUGUUGUCUACGU
GUUGACACGUGUAGCAGAACACGCGGGGGGGGGGGGGGGGGCGAGAAAGA
AGCGGGUGAAGAAAAAAAAAAGAGAGAAUGAAAAAAGUAGCAAGAAUUUC
CCUCCCUCCCUCCCUCCGG
((((((........(((.(.((.((((....((..........((..((((((((((((((((((((((..((.........)).))))))))))...........))))))))).)))..)).......))..)))).)).)))).........(((.(((.(((.(((.((((((((...(((..((((..............(..((((((...))))))..).((.((.(((((((..........((((......))))..........))))))).)).))))))..)))...)))).))))))))))))))))...))))))........(((((.(((((((((....)))))))).).))))).((((((((((((((((((.((((.....((....................................)).....)))))))))))))))))))))). (-163.81)

Length sequence

: 469

Length match:

170