chr23_4

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

26.3

E-value:

0.00046

From sequence:

202228

To sequence:

202145

Alignments:

                                  v                     v                v         v                   NC
                 ((((((((-((((((-((((-(((((,<<____>>,,,,<<----~~~~~~---->>,)))))-))))-))))))-))))))))- CS
  RF01390    120 gaGGcGGCUgccGCgccggcuGCcGcugcAcuugcuGaCGcugcu*[17]*UUUUgCugCgGCugccgacGCggcUGCCgCCucu 215   
                 :::GC :CU:::GC: : G: GC:G:UGC   UGCUG   :   U      U   : U:C:GCU:C : :GC:::UG: GC:::U
    chr23 202228 ACAGCUCCUGUUGCGGUUGGGGCUGUUGCUGCUGCUGCUGGCCAU*[ 5]*UGCCCAUACAGCUCCUGUUGCGGUUGGGGCUGUU 202145
                 ************************************987665555...4..4444559*************************** PP

>>

RNAfold
>chr23_4
CAGAGCAGCUUGGCAACGCUAGCAGCUCAGGCGCAGCAGCAACAGCCCCA
ACCGCAACAGGGGCCGUAUGGGCAACAGUAUGGCCAGCAGCAGCAGCAAC
AGCCCCAACCGCAACAGGAGCUGUAUGGGCAACAGUAUGGCCAGCAGCAG
CAGCAACAGCCCCAACCGCAACAGGAGCUGUAUGGGCAACAGUAUGGCCA
GCAGCAGCAGCAACAGCCCCAACCGCAACAGGAGCUGUAUGGGCAACAGU
AUGGCCAGCAGCAGCAGCAACAGCCCCAA
..((((.(((.(((...)))))).)))).(((...((.((.((.(((((..........))))).))..((((.......((((((((.(..((..(((((((.((..........)).))))).)).))..).)).))))))((.((.((.((.(((((.((..........)).))))).(((.((......)).))))).)).)).))....))))...((......)).(((((.(((.((......)).)))))))).)).))....))).... (-89.70)

Length sequence

: 279

Length match:

82