chr23_40

cmsearch-Rfam

Family :

TB9Cs1H1

Id:

RF01861

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01861

Description:

not description

Score:

38.5

E-value:

2.8e-05

From sequence:

761100

To sequence:

761035

Alignments:

                  v              v                              v             v     NC
                 :<<<<<<--------<<<<<_________...____________>>>>>------->>>>>>:::: CS
  RF01861      1 AGCgCAGaauAuGAAaCCaGUucuuGCgu...AcuuGUGCUGCgCuGGuGCCGAaACUGcGCaAGA 63    
                     CAG +UA+GAAA CAGU+C+UGCG    ACUUGUGCUGCGCUG UGCCG   CUG    AG 
    chr23 761100 UGUGCAGCCUAGGAAACCAGUGCAUGCGCgagACUUGUGCUGCGCUGCUGCCGCUGCUGUGGCAGG 761035
                 ********************************9********************************* PP

>>

RNAfold
>chr23_40
CUGCCACAGCAGCGGCAGCAGCGCAGCACAAGUCUCGCGCAUGCACUGGU
UUCCUAGGCUGCACA
(((((.(....).)))))..(((..((....))..)))(((.((.((((....)))))))))... (-20.00)

Length sequence

: 65

Length match:

64