chr23_48

cmsearch-Rfam

Family :

TB9Cs1H2

Id:

RF01552

Type:

Gene; snRNA; snoRNA; HACA-box;

Taxonomy:

Eukaryota;

Ontology:

GO:0006396 RNA processingRF01552

Description:

not description

Score:

109.2

E-value:

4.5e-21

From sequence:

757668

To sequence:

757583

Alignments:

                                                                                                        NC
                 ::<<<-<<------<<<______________________________________________>>>------->>->>>::::::: CS
  RF01552      1 aACGGGGCAAUCCGAGGUgcacGUGgcuUGcgcCcGCUCGCGGGaCUcuGUGCCGuGGuGcgaCCUUCUGGUAGCuCCGGAGAgcC 86    
                 AACGGGGCAAUCCGAGGUGCACGUGGCUUGCGCCCGCUCGCGGG+CUC GUGCCGUGGUGCGACCUUCUGGUAGC+CCGGAGAGCC
    chr23 757668 AACGGGGCAAUCCGAGGUGCACGUGGCUUGCGCCCGCUCGCGGGGCUCGGUGCCGUGGUGCGACCUUCUGGUAGCACCGGAGAGCC 757583
                 ************************************************************************************** PP

>>

RNAfold
>chr23_48
GCUCUCCGGUGCUACCAGAAGGUCGCACCACGGCACCGAGCCCCGCGAGC
GGGCGCAAGCCACGUGCACCUCGGAUUGCCCCGUU
.......(((((.(((....))).)))))..(((((((((....((..((((((....))).)))))..)))))..))))..... (-33.40)

Length sequence

: 85

Length match:

84