chr23_5

cmsearch-Rfam

Family :

isrG

Id:

RF01390

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

27.0

E-value:

0.0003

From sequence:

202456

To sequence:

202373

Alignments:

                                  v                     v                v         v                   NC
                 ((((((((-((((((-((((-(((((,<<____>>,,,,<<----~~~~~~---->>,)))))-))))-))))))-))))))))- CS
  RF01390    120 gaGGcGGCUgccGCgccggcuGCcGcugcAcuugcuGaCGcugcu*[17]*UUUUgCugCgGCugccgacGCggcUGCCgCCucu 215   
                 :: GC::CU:::GC: : G: GC:G:UGC   UGCUG   :   U      U   : U:C:GCU:C : :GC:::UG::GC ::U
    chr23 202456 ACGGCCCCUGUUGCGGUUGGGGCUGUUGCUGCUGCUGCUGGCCAU*[ 5]*UGCCCAUACAGCUCCUGUUGCGGUUGGGGCUGUU 202373
                 ************************************987665555...4..4444559*************************** PP

>>

RNAfold
>chr23_5
CAGGAGCUGUAUGGGCAACAGUAUGGCCAGCAGCAGCAGCAACAGCCCCA
ACCGCAACAGGAGCUGUAUGGGCAACAGUAUGGCCAGCAGCAGCAGCAAC
AGCCCCAACCGCAACAGGAGCUGUAUGGGCAACAGUAUGGCCAGCAGCAG
CAGCAACAGCCCCAACCGCAACAGGGGCCGUAUGGGCAACAGUAUGGCCA
GCAGCAGCAGCAACAGCCCCAACCGCAACAGGGGCCGUAUGGGCAACAGU
AUGGCCAGCAGCAGCAGCAACCCCAACCG
..(..(((((.(((.((((.((.((.(((((.((.((.((....((((...((......)).(((((.(((.((......)).)))))))).......(((((.((..........)).)))))..)))).......((((((((.(..((..((((.(((((..........))))).)).)).))..).)).)))))))).)).)).)).((.(((((..........))))).)).))).)))).)).)).))))))))..).............. (-88.90)

Length sequence

: 279

Length match:

82