chr23_62

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

60.7

E-value:

7.1e-12

From sequence:

215345

To sequence:

215273

Alignments:

                             v        v                                                    NC
                 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,.,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaagg.cgcgGGUUCgAaUCCcgcuaucucCa 71    
                 ::: :::U+::: AGUGGU A :::GUC:G:+UUA A :C:GAA G CGCGGGUUCGAA CCCGC::: :::A
    chr23 215345 GCGUGGGUGAUCUAGUGGUuAUGAUGUCUGCUUUACACGCAGAACGuCGCGGGUUCGAACCCCGCCCCGCGUA 215273
                 ****************9999************************899************************** PP

>>

RNAfold
>chr23_62
ACGCGGGGCGGGGUUCGAACCCGCGACGUUCUGCGUGUAAAGCAGACAUC
AUAACCACUAGAUCACCCACGC
.((.((((((((.......)))))((.((.((((.......)))))).))...............))).)). (-23.00)

Length sequence

: 72

Length match:

71