chr23_69

cmsearch-Rfam

Family :

tRNA

Id:

RF00005

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short
double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the
characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which
is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs
corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the
genetic code in two manners: having more than one tRNA (with a specific anti-codon) for
a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon
position.

Score:

62.1

E-value:

2.9e-12

From sequence:

216916

To sequence:

216845

Alignments:

                             v        v                                                   NC
                 (((((((,,<<<<______._>>>>,<<<<<_______>>>>>,,,,<<<<<_______>>>>>))))))): CS
  RF00005      1 GgagauaUAGCucAgUGGU.AgaGCgucgGaCUuaaAAuCcgaaggcgcgGGUUCgAaUCCcgcuaucucCa 71    
                 G:A::U:U+::: A+ GGU A ::: :C:G:CUU  AA:C:G:+G+C:CGGGUUCGA UCCCG::A::U:CA
    chr23 216916 GCAAUUGUGGUCCAACGGUuAAGAUCCCCGCCUUCCAAGCGGGUGACCCGGGUUCGACUCCCGGCAAUUGCA 216845
                 ****************9999**************************************************** PP

>>

RNAfold
>chr23_69
GCAAUUGCCGGGAGUCGAACCCGGGUCACCCGCUUGGAAGGCGGGGAUCU
UAACCGUUGGACCACAAUUGC
((((((((((((.......)))))(((.(((((((...)))))))))).....((...))....))))))) (-27.70)

Length sequence

: 71

Length match:

70