chr23_71

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

37.0

E-value:

0.00011

From sequence:

215484

To sequence:

215414

Alignments:

                               vv      vv                                                        NC
                 (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
  RF01852      1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91    
                 GG:::::    ::G   UGGU   C::U:CGG:CUU  AA:CCG:A         ::GGUUCGA UCC::  :::::CC
    chr23 215484 GGUCCUAU--GGUGUAGUGGUUAUCACUUCGGACUUUGAAUCCGAAA*[ 1]*CCCAGGUUCGAAUCCUG-GUAGGACC 215414
                 ******98..8***********************************9...5..34***************.89****** PP

>>

RNAfold
>chr23_71
UGGGAAAAUGGUCCUACCAGGAUUCGAACCUGGGUUUUCGGAUUCAAAGU
CCGAAGUGAUAACCACUACACCAUAGGACCGCAGCGUCAC
........(((((((((((((.......)))))...((((((((...))))))))(((.....))).......))))))))......... (-27.50)

Length sequence

: 90

Length match:

69