chr23_72

cmsearch-Rfam

Family :

tRNA-Sec

Id:

RF01852

Type:

Gene; tRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses; Archaea;

Ontology:

GO:0030533 triplet codon-amino acid adaptor activity

Description:

not description

Score:

35.4

E-value:

0.00029

From sequence:

216916

To sequence:

216846

Alignments:

                               vv      vv   v                 v                                  NC
                 (((((((((,,<<<<<<____>>>>>><<<<<<_______>>>>>>,~~~~~~,,<<<<_______>>>>))))))))) CS
  RF01852      1 GggggggcgaucggcccUGGUgggccguccGGgCUUCAAAcCCggaG*[18]*gGggGGUUCGAUUCCcccgccccccC 91    
                 G:::::G     ::  : GGU:  ::  CC:G:CUUC AA:C:GG G        :GGGUUCGA UCCC:  C:::::C
    chr23 216916 GCAAUUGU--GGUCCAACGGUUAAGAUCCCCGCCUUCCAAGCGGGUG*[ 1]*CCCGGGUUCGACUCCCG-GCAAUUGC 216846
                 ******98..9***********************************9...5..34***************.89****** PP

RNAfold
>chr23_72
UGAAAAGGUGCAAUUGCCGGGAGUCGAACCCGGGUCACCCGCUUGGAAGG
CGGGGAUCUUAACCGUUGGACCACAAUUGCGACAUGUACC
......((((((.((((..(..(((.(((..(((((.(((((((...)))))))))))).....))).)))..)....))))..)))))) (-32.90)

Length sequence

: 90

Length match:

69