chr24_1

cmsearch-Rfam

Family :

DLG2-AS1_2

Id:

RF02113

Type:

Gene; lncRNA;

Taxonomy:

Eukaryota;

Ontology:

GO:0010468 regulation of gene expression

Description:

not description

Score:

20.3

E-value:

0.0064

From sequence:

386212

To sequence:

386058

Alignments:

                 :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF02113     10 GUCUUUUCCAUCUGGGCugCAgACUGAGCUGAGaaGGUCaGGGgcAuGuucUacgGGCAGgACACauGCcgGacuuuGGAGGCCAGUgUGCauAGg 105   
                 G   UUUCCAUCUG GCu   +AC  AG UGAG  GGU a GG      ucU c+ GC G A  C    + G c u GG G    GUgUGC   G 
    chr24 386212 GGUCUUUCCAUCUGAGCUCUUCACGAAGUUGAGCUGGUUAAGG-----CUCUCCAAGCGGAAACCU---UCGGCGUCGGCGUGUGGUGUGCCGCG- 386126
                 4445678***************************999988776.....456666666655443332...23444555555555566666665433. PP

                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
  RF02113    106 GAGuCcAGCcAUccUCacAaacaCUcaGcAcaUGUCAuGCUGGGGGgCAGAGCAGcggGuGUgCUGUCUGG 176   
                   Gu cAG  A + UC cAaac C   G  caUG     C  G GGgCA AGC Gc g uG gCUGU UG 
    chr24 386125 --GUUCAGAUAGU-UCCCAAACGCCAGGAUCAUGCGCAUCAUGCGGGCAAAGCGGCCGUUGCGCUGUGUGA 386058
                 ..56667766655.466777888888888888887766777788899*******************99875 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (215 consensus positions)
Target sequences:                                       34  (57702516 residues searched)
Windows passing local HMM SSV      filter:            4720  (0.03643); expected (0.02)
Windows passing local HMM MSV bias filter:            3307  (0.02546); expected (0.02)
Windows passing local HMM Viterbi  filter:              56  (0.0004468); expected (0.001)
Windows passing local HMM Forward  filter:               4  (3.076e-05); expected (1e-05)
Total HMM hits reported:                                 1  (2.686e-06)

# CPU time: 1.90u 0.01s 00:00:01.91 Elapsed: 00:00:00.45
//

RNAfold
>chr24_1
AGACUCCGUCGACGCGGCCGUGUGCGCCAUCACACAGCGCAACGGCCGCU
UUGCCCGCAUGAUGCGCAUGAUCCUGGCGUUUGGGAACUAUCUGAACCGC
GGCACACCACACGCCGACGCCGAAGGUUUCCGCUUGGAGAGCCUUAACCA
GCUCAACUUCGUGAAGAGCUCAGAUGGAAAGACCACAGUGCUGAUGGCGU
UUGUCGUGUCACUC
.........(((.((((((((.(((((.........))))))))))))).)))...(((((((((((...(((..(((((((((...((((((((..((((((.........)))).))...(((((((((....))))).)))).....((((..(.....)..)))))))))))).....))).))))))))).))))..)))))))..... (-73.60)

Length sequence

: 214

Length match:

153